Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004024
(ldpred2.auto.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 958,046
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004024/ScoringFiles/PGS004024.txt.gz
PGS004025
(ldpred2.auto.GCST004988.Breast_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Breast cancer breast carcinoma 1,041,298
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004025/ScoringFiles/PGS004025.txt.gz
PGS004026
(ldpred2.auto.GCST005838.Stroke)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Stroke stroke 1,011,468
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004026/ScoringFiles/PGS004026.txt.gz
PGS004027
(ldpred2.auto.GCST006085.Prostate_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Prostate cancer prostate carcinoma 1,045,276
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004027/ScoringFiles/PGS004027.txt.gz
PGS004028
(ldpred2.auto.GCST007140.HDL)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 992,696
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004028/ScoringFiles/PGS004028.txt.gz
PGS004029
(ldpred2.auto.GCST007954.HbA1c)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HbA1c HbA1c measurement 907,906
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004029/ScoringFiles/PGS004029.txt.gz
PGS004030
(ldpred2.auto.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 1,050,295
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004030/ScoringFiles/PGS004030.txt.gz
PGS004031
(ldpred2.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 1,050,295
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004031/ScoringFiles/PGS004031.txt.gz
PGS004032
(ldpred2.auto.GCST008972.Gout)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Gout gout 865,644
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004032/ScoringFiles/PGS004032.txt.gz
PGS004033
(ldpred2.auto.GCST008972.Urate)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Urate urate measurement 865,644
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004033/ScoringFiles/PGS004033.txt.gz
PGS004034
(ldpred2.auto.GCST90012877.AD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Alzheimer's disease Alzheimer disease 1,046,908
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004034/ScoringFiles/PGS004034.txt.gz
PGS004035
(ldpred2.auto.GCST90013445.T1D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 56,562
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004035/ScoringFiles/PGS004035.txt.gz
PGS004036
(ldpred2.auto.GCST90018959.Height)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Height body height 929,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004036/ScoringFiles/PGS004036.txt.gz
PGS004037
(ldpred2.CV.GCST002783.BMI)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Body mass index (BMI) body mass index 919,377
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004037/ScoringFiles/PGS004037.txt.gz
PGS004038
(ldpred2.CV.GCST004131.IBD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Inflammatory bowel disease (IBD) inflammatory bowel disease 1,018,068
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004038/ScoringFiles/PGS004038.txt.gz
PGS004039
(ldpred2.CV.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 958,046
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004039/ScoringFiles/PGS004039.txt.gz
PGS004040
(ldpred2.CV.GCST004988.Breast_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Breast cancer breast carcinoma 1,041,298
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004040/ScoringFiles/PGS004040.txt.gz
PGS004041
(ldpred2.CV.GCST005838.Stroke)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Stroke stroke 1,011,468
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004041/ScoringFiles/PGS004041.txt.gz
PGS004042
(ldpred2.CV.GCST006085.Prostate_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Prostate cancer prostate carcinoma 1,045,276
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004042/ScoringFiles/PGS004042.txt.gz
PGS004043
(ldpred2.CV.GCST007140.HDL)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 578,264
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004043/ScoringFiles/PGS004043.txt.gz
PGS004044
(ldpred2.CV.GCST007954.HbA1c)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HbA1c HbA1c measurement 907,906
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004044/ScoringFiles/PGS004044.txt.gz
PGS004045
(ldpred2.CV.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 1,050,295
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004045/ScoringFiles/PGS004045.txt.gz
PGS004046
(ldpred2.CV.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 1,050,295
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004046/ScoringFiles/PGS004046.txt.gz
PGS004047
(ldpred2.CV.GCST008972.Gout)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Gout gout 865,644
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004047/ScoringFiles/PGS004047.txt.gz
PGS004048
(ldpred2.CV.GCST008972.Urate)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Urate urate measurement 865,644
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004048/ScoringFiles/PGS004048.txt.gz
PGS004049
(ldpred2.CV.GCST90013534.RA)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Rheumatoid arthritis rheumatoid arthritis 373,627
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004049/ScoringFiles/PGS004049.txt.gz
PGS004050
(megaprs.auto.GCST002783.BMI)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Body mass index (BMI) body mass index 609,706
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004050/ScoringFiles/PGS004050.txt.gz
PGS004051
(megaprs.auto.GCST004131.IBD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Inflammatory bowel disease (IBD) inflammatory bowel disease 784,928
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004051/ScoringFiles/PGS004051.txt.gz
PGS004052
(megaprs.auto.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 800,598
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004052/ScoringFiles/PGS004052.txt.gz
PGS004053
(megaprs.auto.GCST004988.Breast_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Breast cancer breast carcinoma 869,407
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004053/ScoringFiles/PGS004053.txt.gz
PGS004054
(megaprs.auto.GCST005838.Stroke)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Stroke stroke 852,173
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004054/ScoringFiles/PGS004054.txt.gz
PGS004055
(megaprs.auto.GCST006085.Prostate_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Prostate cancer prostate carcinoma 777,255
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004055/ScoringFiles/PGS004055.txt.gz
PGS004056
(megaprs.auto.GCST007140.HDL)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 791,965
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004056/ScoringFiles/PGS004056.txt.gz
PGS004057
(megaprs.auto.GCST007954.HbA1c)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HbA1c HbA1c measurement 514,367
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004057/ScoringFiles/PGS004057.txt.gz
PGS004058
(megaprs.auto.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 846,995
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004058/ScoringFiles/PGS004058.txt.gz
PGS004059
(megaprs.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 846,995
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004059/ScoringFiles/PGS004059.txt.gz
PGS004060
(megaprs.auto.GCST008972.Gout)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Gout gout 677,631
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004060/ScoringFiles/PGS004060.txt.gz
PGS004061
(megaprs.auto.GCST008972.Urate)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Urate urate measurement 677,631
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004061/ScoringFiles/PGS004061.txt.gz
PGS004062
(megaprs.auto.GCST90012877.AD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Alzheimer's disease Alzheimer disease 691,136
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004062/ScoringFiles/PGS004062.txt.gz
PGS004063
(megaprs.auto.GCST90013445.T1D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 56,288
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004063/ScoringFiles/PGS004063.txt.gz
PGS004064
(megaprs.auto.GCST90013534.RA)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Rheumatoid arthritis rheumatoid arthritis 402,214
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004064/ScoringFiles/PGS004064.txt.gz
PGS004065
(megaprs.auto.GCST90018959.Height)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Height body height 980,499
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004065/ScoringFiles/PGS004065.txt.gz
PGS004066
(megaprs.CV.GCST002783.BMI)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Body mass index (BMI) body mass index 602,445
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004066/ScoringFiles/PGS004066.txt.gz
PGS004067
(megaprs.CV.GCST004131.IBD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Inflammatory bowel disease (IBD) inflammatory bowel disease 784,928
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004067/ScoringFiles/PGS004067.txt.gz
PGS004068
(megaprs.CV.GCST004773.T2D)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 800,598
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004068/ScoringFiles/PGS004068.txt.gz
PGS004069
(megaprs.CV.GCST004988.Breast_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Breast cancer breast carcinoma 869,407
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004069/ScoringFiles/PGS004069.txt.gz
PGS004070
(megaprs.CV.GCST005838.Stroke)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Stroke stroke 852,173
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004070/ScoringFiles/PGS004070.txt.gz
PGS004071
(megaprs.CV.GCST006085.Prostate_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Prostate cancer prostate carcinoma 777,255
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004071/ScoringFiles/PGS004071.txt.gz
PGS004072
(megaprs.CV.GCST007140.HDL)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 791,965
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004072/ScoringFiles/PGS004072.txt.gz
PGS004073
(megaprs.CV.GCST007954.HbA1c)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HbA1c HbA1c measurement 514,367
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004073/ScoringFiles/PGS004073.txt.gz
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