Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000959
(GBE_HC136)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Connective tissue disorder connective tissue disease 16
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000959/ScoringFiles/PGS000959.txt.gz
PGS000960
(GBE_HC1236)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other systemic involvement of connective tissue (time-to-event) connective tissue disease 79
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000960/ScoringFiles/PGS000960.txt.gz
PGS000961
(GBE_HC987)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Phlebitis and thrombophlebitis (time-to-event) Phlebitis,
Thrombophlebitis		 1,143
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000961/ScoringFiles/PGS000961.txt.gz
PGS000962
(GBE_HC942)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Chronic ischaemic heart disease (time-to-event) Myocardial Ischemia 2,168
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000962/ScoringFiles/PGS000962.txt.gz
PGS000963
(GBE_HC1184)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Follicular cysts of skin and subcutaneous tissue (time-to-event) Follicular Cyst 264
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000963/ScoringFiles/PGS000963.txt.gz
PGS000964
(GBE_HC176)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Slipped disc Epiphyses, Slipped 47
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000964/ScoringFiles/PGS000964.txt.gz
PGS000965
(GBE_HC219)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Hypothyroidism/myxoedema hypothyroidism,
myxedema		 4,535
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000965/ScoringFiles/PGS000965.txt.gz
PGS000966
(GBE_HC26)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Iritis iritis 1
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000966/ScoringFiles/PGS000966.txt.gz
PGS000967
(GBE_HC1221)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Coxarthrosis [arthrosis of hip] (time-to-event) osteoarthritis, hip 634
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000967/ScoringFiles/PGS000967.txt.gz
PGS000969
(GBE_INI20015)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Sitting height sitting height measurement 36,345
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000969/ScoringFiles/PGS000969.txt.gz
PGS000972
(GBE_BIN10030500)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Microalbumin [> 40 mg/L] urinary microalbumin measurement 1,097
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000972/ScoringFiles/PGS000972.txt.gz
PGS000976
(GBE_BIN23066)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 JCV seropositivity for Human Polyomavirus JCV polyomavirus 2 seropositivity 16
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000976/ScoringFiles/PGS000976.txt.gz
PGS000977
(GBE_BIN23067)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 MCV seropositivity for Merkel Cell Polyomavirus merkel cell virus seropositivity 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000977/ScoringFiles/PGS000977.txt.gz
PGS000978
(GBE_INI1438)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Bread intake carbohydrate intake measurement 3,483
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000978/ScoringFiles/PGS000978.txt.gz
PGS000980
(GBE_BIN_FC40002267)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Use of sun / ultraviolet protection (always) sun exposure measurement 2,594
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000980/ScoringFiles/PGS000980.txt.gz
PGS000982
(GBE_BIN_FC10002267)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Use of sun / ultraviolet protection (never / rarely) sun exposure measurement 1,141
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000982/ScoringFiles/PGS000982.txt.gz
PGS000984
(GBE_INI2237)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Frequency of playing computer games lifestyle measurement 5,774
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000984/ScoringFiles/PGS000984.txt.gz
PGS000987
(GBE_INI30260)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Mean reticulocyte volume mean reticulocyte volume 13,277
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000987/ScoringFiles/PGS000987.txt.gz
PGS000988
(GBE_INI30290)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 High light scatter reticulocyte percentage reticulocyte measurement 7,184
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000988/ScoringFiles/PGS000988.txt.gz
PGS000989
(GBE_INI30240)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reticulocyte percentage reticulocyte measurement 6,251
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000989/ScoringFiles/PGS000989.txt.gz
PGS000990
(GBE_HC878)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Retinal detachments and breaks (time-to-event) retinal detachment,
retinal break		 237
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000990/ScoringFiles/PGS000990.txt.gz
PGS000991
(GBE_BIN_FC4006144)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Never eat sugar sugar consumption measurement 2,816
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000991/ScoringFiles/PGS000991.txt.gz
PGS000993
(GBE_QT_FC1001329)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Oily fish consumption fish consumption measurement 3,925
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000993/ScoringFiles/PGS000993.txt.gz
PGS000994
(GBE_INI1488)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Tea intake tea consumption measurement 3,119
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000994/ScoringFiles/PGS000994.txt.gz
PGS000995
(GBE_BIN_FC6006149)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Dentures dentures 6,042
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000995/ScoringFiles/PGS000995.txt.gz
PGS000996
(GBE_HC262)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Diverticular disease/diverticulitis diverticular disease,
diverticulitis		 368
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000996/ScoringFiles/PGS000996.txt.gz
PGS000997
(GBE_HC1106)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Diverticular disease of intestine (time-to-event) diverticular disease 5,757
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000997/ScoringFiles/PGS000997.txt.gz
PGS000998
(GBE_QT_FC1001697)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Comparative body height at age 10 comparative body size at age 10, self-reported 24,144
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000998/ScoringFiles/PGS000998.txt.gz
PGS000999
(GBE_QT_FC1001687)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Comparative body size at age 10 comparative body size at age 10, self-reported 13,034
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000999/ScoringFiles/PGS000999.txt.gz
PGS001000
(GBE_QT_FC1001190)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Nap during day nap during day, self-reported 10,264
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001000/ScoringFiles/PGS001000.txt.gz
PGS001001
(GBE_QT_FC1001170)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Getting up in morning ease of getting up in the morning, self-reported 7,743
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001001/ScoringFiles/PGS001001.txt.gz
PGS001002
(GBE_INI23102)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Whole body water mass whole body water mass 35,046
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001002/ScoringFiles/PGS001002.txt.gz
PGS001003
(GBE_INI137)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Number of medications taken number of treatments or medications taken, self-reported 8,085
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001003/ScoringFiles/PGS001003.txt.gz
PGS001004
(GBE_INI135)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Number of non-cancer illnesses number of non-cancer illnesses, self-reported 5,212
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001004/ScoringFiles/PGS001004.txt.gz
PGS001005
(GBE_INI134)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Number of self reported cancers number of cancers, self-reported 526
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001005/ScoringFiles/PGS001005.txt.gz
PGS001006
(GBE_BIN_FC1002306)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Weight change compared with 1 year ago body weight,
self-reported trait		 2,638
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001006/ScoringFiles/PGS001006.txt.gz
PGS001007
(GBE_INI2139)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Age at first sexual intercourse age at first sexual intercourse measurement 9,997
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001007/ScoringFiles/PGS001007.txt.gz
PGS001008
(GBE_QT_FC1002178)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Overall health rating health satisfaction measurement 10,464
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001008/ScoringFiles/PGS001008.txt.gz
PGS001009
(GBE_INI3064)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 PEF peak expiratory flow 9,523
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001009/ScoringFiles/PGS001009.txt.gz
PGS001010
(GBE_INI1003064)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 PEF pred. ratio peak expiratory flow 15,135
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001010/ScoringFiles/PGS001010.txt.gz
PGS001011
(GBE_HC534)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Viral warts (time-to-event) common wart 5
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001011/ScoringFiles/PGS001011.txt.gz
PGS001012
(GBE_QT_FC1002296)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Number of falls in the last year fall 2,103
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001012/ScoringFiles/PGS001012.txt.gz
PGS001013
(GBE_BIN_FC5006148)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Macular degeneration macular degeneration 53
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001013/ScoringFiles/PGS001013.txt.gz
PGS001014
(GBE_HC654)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Other disorders of pancreatic internal secretion (time-to-event) pancreas disease 69
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001014/ScoringFiles/PGS001014.txt.gz
PGS001015
(GBE_HC85)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Enlarged prostate prostate disease 449
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001015/ScoringFiles/PGS001015.txt.gz
PGS001016
(GBE_BIN1950)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Sensitivity / hurt feelings feeling emotionally hurt measurement 7,922
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001016/ScoringFiles/PGS001016.txt.gz
PGS001017
(GBE_BIN2010)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Suffer from 'nerves' feeling nervous measurement 3,348
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001017/ScoringFiles/PGS001017.txt.gz
PGS001018
(GBE_BIN_FC10006160)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Attending social / leisure activities (attend any of the followings in once a week or more often: sports club, gym, pub, social club, religious group, adult edication class, or other group activity) social interaction measurement 2,912
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001018/ScoringFiles/PGS001018.txt.gz
PGS001019
(GBE_BIN_FC20006160)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Attending social / leisure activities (regular attendance at a gym or sports club) social interaction measurement 11,361
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001019/ScoringFiles/PGS001019.txt.gz
PGS001020
(GBE_BIN_FC50006160)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Attending social / leisure activities (regular attendance at an adult education class) social interaction measurement 220
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001020/ScoringFiles/PGS001020.txt.gz
Showing 951 to 1000 of 5091 rows