Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001873
(portability-PLR_704)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diseases of hair and hair follicles disorder of pilosebaceous unit 461
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001873/ScoringFiles/PGS001873.txt.gz
PGS001874
(portability-PLR_706.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sebaceous cyst Epidermal Inclusion Cyst 563
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001874/ScoringFiles/PGS001874.txt.gz
PGS001875
(portability-PLR_714.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Rheumatoid arthritis rheumatoid arthritis 256
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001875/ScoringFiles/PGS001875.txt.gz
PGS001876
(portability-PLR_715.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankylosing spondylitis ankylosing spondylitis 85
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001876/ScoringFiles/PGS001876.txt.gz
PGS001877
(portability-PLR_716)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Other arthropathies Arthropathy 17,363
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001877/ScoringFiles/PGS001877.txt.gz
PGS001878
(portability-PLR_717)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Polymyalgia rheumatica polymyalgia rheumatica 142
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001878/ScoringFiles/PGS001878.txt.gz
PGS001879
(portability-PLR_727.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ganglion and cyst of synovium, tendon, and bursa ganglion or cyst of synovium/tendon/bursa 210
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001879/ScoringFiles/PGS001879.txt.gz
PGS001880
(portability-PLR_728.71)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Contracture of palmar fascia [Dupuytren's disease] Dupuytren Contracture 2,443
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001880/ScoringFiles/PGS001880.txt.gz
PGS001881
(portability-PLR_735.3)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hallux valgus (Bunion) Hallux valgus 4,527
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001881/ScoringFiles/PGS001881.txt.gz
PGS001882
(portability-PLR_740)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Osteoarthrosis osteoarthritis 11,451
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001882/ScoringFiles/PGS001882.txt.gz
PGS001883
(portability-PLR_743.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Osteoporosis osteoporosis 365
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001883/ScoringFiles/PGS001883.txt.gz
PGS001884
(portability-PLR_785)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Abdominal pain Abdominal pain 2,796
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001884/ScoringFiles/PGS001884.txt.gz
PGS001885
(portability-PLR_960.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Allergy/adverse effect of penicillin drug allergy 95
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001885/ScoringFiles/PGS001885.txt.gz
PGS001886
(portability-PLR_albumin)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Albumin serum albumin amount 60,423
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001886/ScoringFiles/PGS001886.txt.gz
PGS001887
(portability-PLR_ankle_spacing)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankle spacing width anthropometric measurement 89,827
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001887/ScoringFiles/PGS001887.txt.gz
PGS001888
(portability-PLR_apoA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Apolipoprotein A apolipoprotein A 1 measurement 74,596
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001888/ScoringFiles/PGS001888.txt.gz
PGS001889
(portability-PLR_apoB)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Apolipoprotein B apolipoprotein B measurement 16,952
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001889/ScoringFiles/PGS001889.txt.gz
PGS001890
(portability-PLR_avMSE)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 avMSE visual acuity measurement 44,864
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001890/ScoringFiles/PGS001890.txt.gz
PGS001891
(portability-PLR_bad_hearing)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hearing difficulty/problems hearing disorder 19,960
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001891/ScoringFiles/PGS001891.txt.gz
PGS001892
(portability-PLR_birth_weight)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Birth weight birth weight 35,060
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001892/ScoringFiles/PGS001892.txt.gz
PGS001893
(portability-PLR_calcium)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Calcium calcium measurement 48,395
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001893/ScoringFiles/PGS001893.txt.gz
PGS001894
(portability-PLR_celiac_gluten)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diagnosed with coeliac disease or gluten sensitivity celiac disease 484
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001894/ScoringFiles/PGS001894.txt.gz
PGS001895
(portability-PLR_cholesterol)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cholesterol total cholesterol measurement 16,576
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001895/ScoringFiles/PGS001895.txt.gz
PGS001896
(portability-PLR_darker_hair0)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hair color (natural, before greying) strand of hair color 31,036
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001896/ScoringFiles/PGS001896.txt.gz
PGS001897
(portability-PLR_darker_skin0)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Skin color Abnormality of skin pigmentation 15,817
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001897/ScoringFiles/PGS001897.txt.gz
PGS001898
(portability-PLR_depressed_for_1w)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ever depressed for a whole week depressive symptom measurement 5,777
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001898/ScoringFiles/PGS001898.txt.gz
PGS001899
(portability-PLR_depression_feelings)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Recent feelings of depression depressive symptom measurement 2,434
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001899/ScoringFiles/PGS001899.txt.gz
PGS001900
(portability-PLR_diastolic_BP)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diastolic blood pressure, automated reading diastolic blood pressure 66,335
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001900/ScoringFiles/PGS001900.txt.gz
PGS001901
(portability-PLR_drink_alcohol)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alcohol drinker status alcohol drinking 1,065
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001901/ScoringFiles/PGS001901.txt.gz
PGS001902
(portability-PLR_ECG_P_duration)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 P duration P wave duration 640
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001902/ScoringFiles/PGS001902.txt.gz
PGS001903
(portability-PLR_ECG_PP_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 PP interval PP interval 4,368
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001903/ScoringFiles/PGS001903.txt.gz
PGS001904
(portability-PLR_ECG_PQ_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 PQ interval PR interval 826
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001904/ScoringFiles/PGS001904.txt.gz
PGS001905
(portability-PLR_ECG_QT_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 QT interval QT interval 2,300
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001905/ScoringFiles/PGS001905.txt.gz
PGS001906
(portability-PLR_ECG_QTC_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 QTc interval QT interval 641
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001906/ScoringFiles/PGS001906.txt.gz
PGS001907
(portability-PLR_ECG_RR_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 RR interval RR interval 1,964
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001907/ScoringFiles/PGS001907.txt.gz
PGS001908
(portability-PLR_erythrocyte_width)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Red blood cell (erythrocyte) distribution width Red cell distribution width 32,431
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001908/ScoringFiles/PGS001908.txt.gz
PGS001909
(portability-PLR_erythrocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Red blood cell (erythrocyte) count erythrocyte count 81,887
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001909/ScoringFiles/PGS001909.txt.gz
PGS001910
(portability-PLR_ever_cannabis)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ever taken cannabis Cannabis use 9,341
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001910/ScoringFiles/PGS001910.txt.gz
PGS001911
(portability-PLR_ever_smoked)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ever smoked smoking status measurement 41,266
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001911/ScoringFiles/PGS001911.txt.gz
PGS001912
(portability-PLR_F_age_first_birth)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Age at first live birth age at first birth measurement 15,201
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001912/ScoringFiles/PGS001912.txt.gz
PGS001913
(portability-PLR_F_length_menstrual_cycle)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Length of menstrual cycle menstrual cycle attribute 339
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001913/ScoringFiles/PGS001913.txt.gz
PGS001914
(portability-PLR_F_log_testosterone)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Testosterone (female only) testosterone measurement,
female		 18,179
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001914/ScoringFiles/PGS001914.txt.gz
PGS001915
(portability-PLR_F_menarche)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Age when periods started (menarche) age at menarche 38,940
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001915/ScoringFiles/PGS001915.txt.gz
PGS001916
(portability-PLR_fall_1y)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Falls in the last year fall 9,917
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001916/ScoringFiles/PGS001916.txt.gz
PGS001917
(portability-PLR_fat_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Body fat percentage body fat percentage 107,244
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001917/ScoringFiles/PGS001917.txt.gz
PGS001918
(portability-PLR_FEV1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Forced expiratory volume in 1-second (FEV1), Best measure forced expiratory volume 79,136
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001918/ScoringFiles/PGS001918.txt.gz
PGS001919
(portability-PLR_fluid_intelligence)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Fluid intelligence score intelligence 26,145
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001919/ScoringFiles/PGS001919.txt.gz
PGS001920
(portability-PLR_foreboding_feelings)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Recent feelings of foreboding worry measurement 2,894
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001920/ScoringFiles/PGS001920.txt.gz
PGS001921
(portability-PLR_fracture_5y)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Fractured/broken bones in last 5 years bone fracture 7,965
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001921/ScoringFiles/PGS001921.txt.gz
PGS001922
(portability-PLR_FVC)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Forced vital capacity (FVC), Best measure vital capacity 85,349
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001922/ScoringFiles/PGS001922.txt.gz
Showing 1801 to 1850 of 5091 rows