Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001973
(portability-PLR_log_platelet)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Platelet count platelet count 60,665
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001973/ScoringFiles/PGS001973.txt.gz
PGS001974
(portability-PLR_log_potassium_urine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Potassium in urine urine potassium amount 21,512
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001974/ScoringFiles/PGS001974.txt.gz
PGS001975
(portability-PLR_log_pulse_rate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Pulse rate, automated reading heart rate 62,254
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001975/ScoringFiles/PGS001975.txt.gz
PGS001976
(portability-PLR_log_reticulocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reticulocyte count reticulocyte count 75,033
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001976/ScoringFiles/PGS001976.txt.gz
PGS001977
(portability-PLR_log_SHBG)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sex hormone binding globulin (SHBG) sex hormone-binding globulin measurement 51,427
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001977/ScoringFiles/PGS001977.txt.gz
PGS001978
(portability-PLR_log_sleep)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sleep duration sleep duration trait 40,037
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001978/ScoringFiles/PGS001978.txt.gz
PGS001979
(portability-PLR_log_triglycerides)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Triglycerides triglyceride measurement 71,203
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001979/ScoringFiles/PGS001979.txt.gz
PGS001980
(portability-PLR_log_urea)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Urea urea measurement 56,782
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001980/ScoringFiles/PGS001980.txt.gz
PGS001981
(portability-PLR_log_ventricular_rate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ventricular rate ventricular rate measurement 6,324
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001981/ScoringFiles/PGS001981.txt.gz
PGS001982
(portability-PLR_log_vitaminD)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Vitamin D vitamin D measurement 35,123
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001982/ScoringFiles/PGS001982.txt.gz
PGS001983
(portability-PLR_log_waist_circ)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Waist circumference waist circumference 96,496
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001983/ScoringFiles/PGS001983.txt.gz
PGS001984
(portability-PLR_log_water_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body water mass whole body water mass 127,910
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001984/ScoringFiles/PGS001984.txt.gz
PGS001985
(portability-PLR_logMAR)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 logMAR in round (left/right) visual acuity measurement 223
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001985/ScoringFiles/PGS001985.txt.gz
PGS001986
(portability-PLR_lymphocyte_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lymphocyte percentage lymphocyte percentage of leukocytes 66,778
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001986/ScoringFiles/PGS001986.txt.gz
PGS001987
(portability-PLR_M_less_hair)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hair/balding pattern balding measurement 23,692
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001987/ScoringFiles/PGS001987.txt.gz
PGS001988
(portability-PLR_M_log_testosterone)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Testosterone (male only) testosterone measurement,
male		 3,985
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001988/ScoringFiles/PGS001988.txt.gz
PGS001989
(portability-PLR_MCH)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean corpuscular hemoglobin mean corpuscular hemoglobin 44,174
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001989/ScoringFiles/PGS001989.txt.gz
PGS001990
(portability-PLR_MCV)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean corpuscular volume erythrocyte volume 47,916
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001990/ScoringFiles/PGS001990.txt.gz
PGS001991
(portability-PLR_monocyte_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Monocyte percentage monocyte percentage of leukocytes 41,887
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001991/ScoringFiles/PGS001991.txt.gz
PGS001992
(portability-PLR_more_evening)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Morning/evening person (chronotype) chronotype measurement 61,542
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001992/ScoringFiles/PGS001992.txt.gz
PGS001993
(portability-PLR_more_sunscreen)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Use of sun/uv protection sun exposure measurement 17,282
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001993/ScoringFiles/PGS001993.txt.gz
PGS001994
(portability-PLR_myopia)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Myopia diagnosis Myopia 30,217
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001994/ScoringFiles/PGS001994.txt.gz
PGS001995
(portability-PLR_narcolepsy)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Daytime dozing / sleeping (narcolepsy) narcolepsy 27,143
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001995/ScoringFiles/PGS001995.txt.gz
PGS001996
(portability-PLR_neuroticism)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Neuroticism score neuroticism measurement 54,715
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001996/ScoringFiles/PGS001996.txt.gz
PGS001997
(portability-PLR_neutrophil_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Neutrophil percentage neutrophil percentage of leukocytes 65,022
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001997/ScoringFiles/PGS001997.txt.gz
PGS001998
(portability-PLR_phosphate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Phosphate phosphate measurement 47,793
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001998/ScoringFiles/PGS001998.txt.gz
PGS001999
(portability-PLR_play_computer)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Plays computer games lifestyle measurement 50,215
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001999/ScoringFiles/PGS001999.txt.gz
PGS002000
(portability-PLR_poorer_health)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Overall health rating health trait 53,716
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002000/ScoringFiles/PGS002000.txt.gz
PGS002001
(portability-PLR_protein)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Total protein total blood protein measurement 69,557
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002001/ScoringFiles/PGS002001.txt.gz
PGS002002
(portability-PLR_red_hair)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hair color (natural, before greying) strand of hair color 2,755
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002002/ScoringFiles/PGS002002.txt.gz
PGS002003
(portability-PLR_reticulocyte_volume)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean reticulocyte volume mean reticulocyte volume 24,536
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002003/ScoringFiles/PGS002003.txt.gz
PGS002004
(portability-PLR_sensitive_stomach)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sensitive stomach health trait 3,970
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002004/ScoringFiles/PGS002004.txt.gz
PGS002005
(portability-PLR_sitting_height)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sitting height sitting height measurement 118,423
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002005/ScoringFiles/PGS002005.txt.gz
PGS002006
(portability-PLR_snoring)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Snoring snoring measurement 33,917
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002006/ScoringFiles/PGS002006.txt.gz
PGS002007
(portability-PLR_sodium_urine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sodium in urine sodium measurement 37,568
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002007/ScoringFiles/PGS002007.txt.gz
PGS002008
(portability-PLR_sphered_cell_volume)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean sphered cell volume hematological measurement 50,360
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002008/ScoringFiles/PGS002008.txt.gz
PGS002009
(portability-PLR_systolic_BP)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Systolic blood pressure, automated reading systolic blood pressure 68,449
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002009/ScoringFiles/PGS002009.txt.gz
PGS002010
(portability-PLR_urate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Urate urate measurement 75,102
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002010/ScoringFiles/PGS002010.txt.gz
PGS002011
(portability-PLR_water_intake)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Water intake drinking behavior 43,709
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002011/ScoringFiles/PGS002011.txt.gz
PGS002012
(portability-PLR_years_of_edu)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Qualifications (years of education) educational attainment 50,413
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002012/ScoringFiles/PGS002012.txt.gz
PGS002013
(portability-ldpred2_153)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Colorectal cancer colorectal cancer 648,559
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002013/ScoringFiles/PGS002013.txt.gz
PGS002014
(portability-ldpred2_172)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Skin cancer skin carcinoma 534,399
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002014/ScoringFiles/PGS002014.txt.gz
PGS002015
(portability-ldpred2_174.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Breast cancer (female) breast carcinoma 488,608
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002015/ScoringFiles/PGS002015.txt.gz
PGS002016
(portability-ldpred2_185)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Prostate cancer prostate carcinoma 450,963
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002016/ScoringFiles/PGS002016.txt.gz
PGS002017
(portability-ldpred2_189.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Bladder cancer urinary bladder carcinoma 510,453
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002017/ScoringFiles/PGS002017.txt.gz
PGS002018
(portability-ldpred2_193)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Thyroid cancer thyroid carcinoma 311,520
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002018/ScoringFiles/PGS002018.txt.gz
PGS002019
(portability-ldpred2_208)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Benign neoplasm of colon benign colon neoplasm 667,546
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002019/ScoringFiles/PGS002019.txt.gz
PGS002020
(portability-ldpred2_211)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Benign neoplasm of other parts of digestive system benign digestive system neoplasm 503,832
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002020/ScoringFiles/PGS002020.txt.gz
PGS002021
(portability-ldpred2_218)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Benign neoplasm of uterus uterine benign neoplasm 547,617
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002021/ScoringFiles/PGS002021.txt.gz
PGS002022
(portability-ldpred2_241.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Nontoxic multinodular goiter multinodular goiter,
nontoxic goiter		 375,470
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002022/ScoringFiles/PGS002022.txt.gz
Showing 1901 to 1950 of 5091 rows