Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003823
(TC_AFR_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 1,155,228
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003823/ScoringFiles/PGS003823.txt.gz
PGS003824
(TC_AFR_CTSLEB)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 1,122,865
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003824/ScoringFiles/PGS003824.txt.gz
PGS003825
(TC_EAS_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 230
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003825/ScoringFiles/PGS003825.txt.gz
PGS003826
(TC_EAS_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 820,996
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003826/ScoringFiles/PGS003826.txt.gz
PGS003827
(TC_EAS_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 820,996
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003827/ScoringFiles/PGS003827.txt.gz
PGS003828
(TC_EAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 1,155,228
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003828/ScoringFiles/PGS003828.txt.gz
PGS003829
(TC_EAS_CTSLEB)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 431,780
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003829/ScoringFiles/PGS003829.txt.gz
PGS003830
(TC_SAS_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 32
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003830/ScoringFiles/PGS003830.txt.gz
PGS003831
(TC_SAS_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 1,468,958
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003831/ScoringFiles/PGS003831.txt.gz
PGS003832
(TC_SAS_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 1,468,958
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003832/ScoringFiles/PGS003832.txt.gz
PGS003833
(TC_SAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 1,155,228
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003833/ScoringFiles/PGS003833.txt.gz
PGS003834
(TC_SAS_CTSLEB)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 770,490
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003834/ScoringFiles/PGS003834.txt.gz
PGS003835
(height_EUR_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Height body height 4,847
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003835/ScoringFiles/PGS003835.txt.gz
PGS003836
(height_EUR_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Height body height 564,325
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003836/ScoringFiles/PGS003836.txt.gz
PGS003837
(height_AFR_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Height body height 49
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003837/ScoringFiles/PGS003837.txt.gz
PGS003838
(height_AFR_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Height body height 752,195
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003838/ScoringFiles/PGS003838.txt.gz
PGS003839
(height_AFR_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Height body height 817,204
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003839/ScoringFiles/PGS003839.txt.gz
PGS003840
(height_AFR_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Height body height 300,880
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003840/ScoringFiles/PGS003840.txt.gz
PGS003841
(height_AFR_CTSLEB)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Height body height 741,637
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003841/ScoringFiles/PGS003841.txt.gz
PGS003842
(bmi_EUR_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Body mass index (BMI) body mass index 145,046
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003842/ScoringFiles/PGS003842.txt.gz
PGS003843
(bmi_EUR_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Body mass index (BMI) body mass index 564,332
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003843/ScoringFiles/PGS003843.txt.gz
PGS003844
(bmi_AFR_CT)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Body mass index (BMI) body mass index 87
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003844/ScoringFiles/PGS003844.txt.gz
PGS003845
(bmi_AFR_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Body mass index (BMI) body mass index 752,209
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003845/ScoringFiles/PGS003845.txt.gz
PGS003846
(bmi_AFR_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Body mass index (BMI) body mass index 817,189
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003846/ScoringFiles/PGS003846.txt.gz
PGS003847
(bmi_AFR_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Body mass index (BMI) body mass index 300,864
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003847/ScoringFiles/PGS003847.txt.gz
PGS003848
(bmi_AFR_CTSLEB)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Body mass index (BMI) body mass index 741,723
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003848/ScoringFiles/PGS003848.txt.gz
PGS003849
(PRSaddiction-rf)
 PGP000490 |
Hatoum AS et al. Nat Ment Health (2023)
 Addiction risk factors substance-related disorder 584,753
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003849/ScoringFiles/PGS003849.txt.gz
PGS003850
(CRC_PRS_200loci)
 PGP000491 |
Fernandez-Rozadilla C et al. Nat Genet (2022)
 Colorectal cancer colorectal cancer 205
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003850/ScoringFiles/PGS003850.txt.gz
PGS003851
(CRC_PRS_EUR)
 PGP000294 |
Thomas M et al. Am J Hum Genet (2020)
 Colorectal cancer colorectal cancer 1,180,765
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003851/ScoringFiles/PGS003851.txt.gz
PGS003852
(CRC_PRS_EUR_EAS)
 PGP000492 |
Thomas M et al. Nat Commun (2023)
 Colorectal cancer colorectal cancer 1,016,596
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003852/ScoringFiles/PGS003852.txt.gz
PGS003853
(PRS60_TC)
 PGP000493 |
Li J et al. JAMA Netw Open (2023)
 Total cholesterol total cholesterol measurement 60
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003853/ScoringFiles/PGS003853.txt.gz
PGS003854
(PRS40_TG)
 PGP000493 |
Li J et al. JAMA Netw Open (2023)
 Triglycerides triglyceride measurement 40
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003854/ScoringFiles/PGS003854.txt.gz
PGS003855
(PRS44_LDL)
 PGP000493 |
Li J et al. JAMA Netw Open (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 44
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003855/ScoringFiles/PGS003855.txt.gz
PGS003856
(PRS59_HDL)
 PGP000493 |
Li J et al. JAMA Netw Open (2023)
 HDL cholesterol high density lipoprotein cholesterol measurement 59
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003856/ScoringFiles/PGS003856.txt.gz
PGS003857
(GRS18_BMIunadj)
 PGP000496 |
Sofer T et al. EBioMedicine (2023)
 Obstructive sleep apnea obstructive sleep apnea 18
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003857/ScoringFiles/PGS003857.txt.gz
PGS003858
(GRS6_BMIadj)
 PGP000496 |
Sofer T et al. EBioMedicine (2023)
 Obstructive sleep apnea (BMI adjusted) obstructive sleep apnea 6
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003858/ScoringFiles/PGS003858.txt.gz
PGS003859
(GRS129_insomnia)
 PGP000497 |
Gibson MJ et al. BMC Med (2023)
 Insomnia insomnia measurement 129
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003859/ScoringFiles/PGS003859.txt.gz
PGS003860
(PGS_RE)
 PGP000498 |
Clark R et al. EBioMedicine (2023)
 Refractive error refractive error measurement 767,867
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003860/ScoringFiles/PGS003860.txt.gz - Check Terms/Licenses
PGS003861
(PRS288_PE)
 PGP000499 |
Zhang Z et al. BMC Med (2023)
 Pulmonary embolism pulmonary embolism 288
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003861/ScoringFiles/PGS003861.txt.gz
PGS003862
(multiancestry_LF_GRS_FF_weights_EUR)
 PGP000500 |
Shrine N et al. Nat Genet (2023)
 Lung function (FEV1/FVC) FEV/FVC ratio 442
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003862/ScoringFiles/PGS003862.txt.gz
PGS003863
(multiancestry_LF_GRS_FF_weights_AFR)
 PGP000500 |
Shrine N et al. Nat Genet (2023)
 Lung function (FEV1/FVC) FEV/FVC ratio 437
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003863/ScoringFiles/PGS003863.txt.gz
PGS003864
(multiancestry_LF_GRS_FF_weights_AMR)
 PGP000500 |
Shrine N et al. Nat Genet (2023)
 Lung function (FEV1/FVC) FEV/FVC ratio 434
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003864/ScoringFiles/PGS003864.txt.gz
PGS003865
(multiancestry_LF_GRS_FF_weights_EAS)
 PGP000500 |
Shrine N et al. Nat Genet (2023)
 Lung function (FEV1/FVC) FEV/FVC ratio 406
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003865/ScoringFiles/PGS003865.txt.gz
PGS003866
(CAD_lassosum2_ARB)
 PGP000501 |
Shim I et al. Nature Communications (2023)
 Coronary artery disease coronary artery disease 10,440
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003866/ScoringFiles/PGS003866.txt.gz
PGS003867
(T2D_PRScs_ARB)
 PGP000501 |
Shim I et al. Nature Communications (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,068,166
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003867/ScoringFiles/PGS003867.txt.gz
PGS003868
(CM_LDpred2_ARB)
 PGP000501 |
Shim I et al. Nature Communications (2023)
 Cardiomyopathy cardiomyopathy 1,010,014
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003868/ScoringFiles/PGS003868.txt.gz
PGS003869
(LDL_PRScsx_ARB_AFRweights)
 PGP000501 |
Shim I et al. Nature Communications (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,022,259
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003869/ScoringFiles/PGS003869.txt.gz
PGS003870
(LDL_PRScsx_ARB_AMRweights)
 PGP000501 |
Shim I et al. Nature Communications (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,067,857
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003870/ScoringFiles/PGS003870.txt.gz
PGS003871
(LDL_PRScsx_ARB_ARBweights)
 PGP000501 |
Shim I et al. Nature Communications (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 882,001
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003871/ScoringFiles/PGS003871.txt.gz
PGS003872
(LDL_PRScsx_ARB_EASweights)
 PGP000501 |
Shim I et al. Nature Communications (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 958,649
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003872/ScoringFiles/PGS003872.txt.gz
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