Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003423
(PRS100_Lassosum)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 100
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003423/ScoringFiles/PGS003423.txt.gz
PGS003424
(PRS100_LDpred2)
 PGP000431 |
Ko CL et al. J Transl Med (2022)
 Ankylosing spondylitis ankylosing spondylitis 100
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003424/ScoringFiles/PGS003424.txt.gz
PGS003425
(prscs_hemoglobin)
 PGP000432 |
Toivonen J et al. Vox Sanguinis (2023)
 Hemoglobin hemoglobin measurement 1,082,250
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003425/ScoringFiles/PGS003425.txt.gz
PGS003426
(prscs_ferritin)
 PGP000432 |
Toivonen J et al. Vox Sanguinis (2023)
 Ferritin ferritin measurement 1,082,414
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003426/ScoringFiles/PGS003426.txt.gz
PGS003427
(lvmi)
 PGP000434 |
Khurshid S et al. Nat Commun (2023)
 Left ventricular mass index (LVMI) left ventricular mass index 465
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003427/ScoringFiles/PGS003427.txt.gz
PGS003428
(Ldpred_CC_170223)
 PGP000435 |
Koel M et al. Hum Mol Genet (2023)
 Cervical cancer cervical carcinoma 2,894,555
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003428/ScoringFiles/PGS003428.txt.gz
PGS003429
(AAA)
 PGP000436 |
Kelemen M et al. Nat Commun (2024)
 Abdominal aortic aneurysm Abdominal Aortic Aneurysm 831,447
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003429/ScoringFiles/PGS003429.txt.gz
PGS003430
(GTG_Melanoma)
 PGP000437 |
Wong CK et al. Melanoma Res (2023)
 Melanoma melanoma 68
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003430/ScoringFiles/PGS003430.txt.gz - Check Terms/Licenses
PGS003431
(LDPred2-inf)
 PGP000438 |
Briggs SEW et al. BMJ (2022)
 Colorectal cancer colorectal cancer 1,104,409
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003431/ScoringFiles/PGS003431.txt.gz
PGS003432
(LDPred2-grid)
 PGP000438 |
Briggs SEW et al. BMJ (2022)
 Colorectal cancer colorectal cancer 1,104,409
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003432/ScoringFiles/PGS003432.txt.gz
PGS003433
(LDPred2-grid-sp)
 PGP000438 |
Briggs SEW et al. BMJ (2022)
 Colorectal cancer colorectal cancer 616,956
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003433/ScoringFiles/PGS003433.txt.gz
PGS003434
(SCT)
 PGP000438 |
Briggs SEW et al. BMJ (2022)
 Colorectal cancer colorectal cancer 194,756
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003434/ScoringFiles/PGS003434.txt.gz
PGS003435
(CT)
 PGP000438 |
Briggs SEW et al. BMJ (2022)
 Colorectal cancer colorectal cancer 13,446
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003435/ScoringFiles/PGS003435.txt.gz
PGS003436
(GWAS-sig)
 PGP000438 |
Briggs SEW et al. BMJ (2022)
 Colorectal cancer colorectal cancer 50
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003436/ScoringFiles/PGS003436.txt.gz
PGS003437
(PRS23_TC)
 PGP000439 |
Feng X et al. JAMA Netw Open (2022)
 Thyroid cancer thyroid carcinoma 23
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003437/ScoringFiles/PGS003437.txt.gz
PGS003438
(PRS241_CAD)
 PGP000440 |
Marston NA et al. JAMA Cardiol (2023)
 Coronary artery disease coronary artery disease 241
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003438/ScoringFiles/PGS003438.txt.gz
PGS003439
(PRSCC_140)
 PGP000441 |
Su YR et al. Cancer Epidemiol Biomarkers Prev (2023)
 Colorectal cancer colorectal cancer 140
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003439/ScoringFiles/PGS003439.txt.gz
PGS003440
(GRS11_nonapoeAD)
 PGP000444 |
Petrican R et al. Sci Rep (2023)
 Alzheimer's disease in non APOE APOE carrier status,
Alzheimer disease		 11
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003440/ScoringFiles/PGS003440.txt.gz
PGS003441
(GRS28_AD)
 PGP000444 |
Petrican R et al. Sci Rep (2023)
 Alzheimer's disease Alzheimer disease 28
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003441/ScoringFiles/PGS003441.txt.gz
PGS003442
(GRS8_MD)
 PGP000444 |
Petrican R et al. Sci Rep (2023)
 Major depressive disorder major depressive disorder 8
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003442/ScoringFiles/PGS003442.txt.gz
PGS003443
(PRScsx_T2D_LAT_EURweights)
 PGP000445 |
Huerta-Chagoya A et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,092,496
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003443/ScoringFiles/PGS003443.txt.gz
PGS003444
(PRScsx_T2D_LAT_EASweights)
 PGP000445 |
Huerta-Chagoya A et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,001,579
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003444/ScoringFiles/PGS003444.txt.gz
PGS003445
(PRScsx_T2D_LAT_LATweights)
 PGP000445 |
Huerta-Chagoya A et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,149,210
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003445/ScoringFiles/PGS003445.txt.gz
PGS003446
(TEM_CAD_PRS)
 PGP000446 |
Tcheandjieu C et al. Nat Med (2022)
 Coronary artery disease coronary artery disease 538,084
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003446/ScoringFiles/PGS003446.txt.gz
PGS003447
(PRS14_endo)
 PGP000447 |
Kloeve-Mogensen K et al. Front Reprod Health (2021)
 Endometriosis endometriosis 14
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003447/ScoringFiles/PGS003447.txt.gz
PGS003448
(PRS15_ALL)
 PGP000448 |
Berndt SI et al. Leukemia (2022)
 Acute lymphoblastic leukemia acute lymphoblastic leukemia 15
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003448/ScoringFiles/PGS003448.txt.gz
PGS003449
(PRS21_HL)
 PGP000448 |
Berndt SI et al. Leukemia (2022)
 Hodgkin lymphoma Hodgkins lymphoma 21
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003449/ScoringFiles/PGS003449.txt.gz
PGS003450
(PRS24_MM)
 PGP000448 |
Berndt SI et al. Leukemia (2022)
 Multiple myeloma multiple myeloma 24
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003450/ScoringFiles/PGS003450.txt.gz
PGS003451
(PRS2_MZL)
 PGP000448 |
Berndt SI et al. Leukemia (2022)
 Marginal zone lymphoma marginal zone B-cell lymphoma 2
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003451/ScoringFiles/PGS003451.txt.gz
PGS003452
(PRS2_WM)
 PGP000448 |
Berndt SI et al. Leukemia (2022)
 Waldenström macroglobulinemia Waldenstrom macroglobulinemia 2
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003452/ScoringFiles/PGS003452.txt.gz
PGS003453
(PRS43_CLL)
 PGP000448 |
Berndt SI et al. Leukemia (2022)
 Chronic lymphocytic leukemia chronic lymphocytic leukemia 43
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003453/ScoringFiles/PGS003453.txt.gz
PGS003454
(PRS5_DLBCL)
 PGP000448 |
Berndt SI et al. Leukemia (2022)
 Diffuse large B-cell lymphoma diffuse large B-cell lymphoma 5
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003454/ScoringFiles/PGS003454.txt.gz
PGS003455
(PRS7_FL)
 PGP000448 |
Berndt SI et al. Leukemia (2022)
 Follicular lymphoma follicular lymphoma 7
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003455/ScoringFiles/PGS003455.txt.gz
PGS003456
(PRS273_VTE)
 PGP000449 |
Folsom AR et al. PLoS One (2023)
 Venous thromboembolism venous thromboembolism 273
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003456/ScoringFiles/PGS003456.txt.gz
PGS003457
(GRS_ICH)
 PGP000450 |
Mayerhofer E et al. Stroke (2023)
 Intracerebral hemorrhage intracerebral hemorrhage 682,890
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003457/ScoringFiles/PGS003457.txt.gz
PGS003458
(PRS_AT)
 PGP000451 |
Al-Janabi A et al. J Invest Dermatol (2023)
 General atopic disease allergic disease 124
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003458/ScoringFiles/PGS003458.txt.gz
PGS003459
(PRS_CO)
 PGP000451 |
Al-Janabi A et al. J Invest Dermatol (2023)
 Atopic eczema or atopic disease atopic eczema,
allergic disease		 170
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003459/ScoringFiles/PGS003459.txt.gz
PGS003460
(PRS278_PCa)
 PGP000453 |
Chen F et al. Eur Urol (2023)
 Prostate cancer prostate carcinoma 278
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003460/ScoringFiles/PGS003460.txt.gz
PGS003461
(GRS162_AF)
 PGP000454 |
Yang L et al. NPJ Digit Med (2023)
 Atrial fibrillation atrial fibrillation 162
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003461/ScoringFiles/PGS003461.txt.gz
PGS003462
(LDPred2_BMI)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Body mass index (BMI) body mass index 749,106
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003462/ScoringFiles/PGS003462.txt.gz
PGS003463
(LDPred2_DBP)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Diastolic blood pressure diastolic blood pressure 848,440
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003463/ScoringFiles/PGS003463.txt.gz
PGS003464
(LDPred2_EOS)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Eosinophil count eosinophil count 859,056
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003464/ScoringFiles/PGS003464.txt.gz
PGS003465
(LDPred2_FEV1FVC)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 FEV1/FVC ratio FEV/FVC ratio 835,705
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003465/ScoringFiles/PGS003465.txt.gz
PGS003466
(LDPred2_FI)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Fasting insulin blood insulin amount 850,362
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003466/ScoringFiles/PGS003466.txt.gz
PGS003467
(LDPred2_HCT)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Hematocrit hematocrit 860,314
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003467/ScoringFiles/PGS003467.txt.gz
PGS003468
(LDPred2_HGB)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Hemoglobin hemoglobin measurement 860,341
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003468/ScoringFiles/PGS003468.txt.gz
PGS003469
(LDPred2_HOMA_B)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 HOMA-B HOMA-B 775,825
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003469/ScoringFiles/PGS003469.txt.gz
PGS003470
(LDPred2_HOMA_IR)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 HOMA-IR HOMA-IR 775,999
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003470/ScoringFiles/PGS003470.txt.gz
PGS003471
(LDPred2_HbA1c)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 HbA1c HbA1c measurement 848,979
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003471/ScoringFiles/PGS003471.txt.gz
PGS003472
(LDPred2_HrRt)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Heart rate heart rate 776,860
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003472/ScoringFiles/PGS003472.txt.gz
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