Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003473
(LDPred2_Insomnia)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Insomnia insomnia measurement 850,033
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003473/ScoringFiles/PGS003473.txt.gz
PGS003474
(LDPred2_LDL)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 LDL levels low density lipoprotein cholesterol measurement 842,513
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003474/ScoringFiles/PGS003474.txt.gz
PGS003475
(LDPred2_LYM)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Lymphocyte count lymphocyte count 859,875
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003475/ScoringFiles/PGS003475.txt.gz
PGS003476
(LDPred2_MAP)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Mean arterial pressure mean arterial pressure 739,104
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003476/ScoringFiles/PGS003476.txt.gz
PGS003477
(LDPred2_PP)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Pulse pressure pulse pressure measurement 847,747
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003477/ScoringFiles/PGS003477.txt.gz
PGS003478
(LDPred2_RBC)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Red blood cell count erythrocyte count 860,281
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003478/ScoringFiles/PGS003478.txt.gz
PGS003479
(LDPred2_SleepApnea)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Obstructive sleep apnea obstructive sleep apnea 836,839
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003479/ScoringFiles/PGS003479.txt.gz
PGS003480
(LDPred2_SleepDuration)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Sleep duration sleep duration trait 850,154
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003480/ScoringFiles/PGS003480.txt.gz
PGS003481
(LDPred2_TC)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Total cholesterol total cholesterol measurement 842,513
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003481/ScoringFiles/PGS003481.txt.gz
PGS003482
(LDPred2_TG)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Triglycerides triglyceride measurement 842,513
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003482/ScoringFiles/PGS003482.txt.gz
PGS003483
(LDPred2_WBC)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 White blood cell count leukocyte quantity 860,306
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003483/ScoringFiles/PGS003483.txt.gz
PGS003484
(LDPred2_WHR)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 Waist-hip ratio waist-hip ratio 855,882
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003484/ScoringFiles/PGS003484.txt.gz
PGS003485
(LDPred2_WHRadjBMI)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 BMI-adjusted waist-hip ratio BMI-adjusted waist-hip ratio 785,126
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003485/ScoringFiles/PGS003485.txt.gz
PGS003486
(PRS_AE)
 PGP000451 |
Al-Janabi A et al. J Invest Dermatol (2023)
 Atopic eczema atopic eczema 71
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003486/ScoringFiles/PGS003486.txt.gz
PGS003487
(PRS_IL4)
 PGP000451 |
Al-Janabi A et al. J Invest Dermatol (2023)
 General atopic disease (IL-4 related variants) allergic disease 25
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003487/ScoringFiles/PGS003487.txt.gz
PGS003488
(PRS_IL12)
 PGP000451 |
Al-Janabi A et al. J Invest Dermatol (2023)
 General atopic disease (IL-12 related variants) allergic disease 10
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003488/ScoringFiles/PGS003488.txt.gz
PGS003489
(PRS_IL17)
 PGP000451 |
Al-Janabi A et al. J Invest Dermatol (2023)
 General atopic disease (IL-17 related variants) allergic disease 18
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003489/ScoringFiles/PGS003489.txt.gz
PGS003490
(cont-decay-ankle_spacing)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Ankle spacing width body weights and measures 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003490/ScoringFiles/PGS003490.txt.gz
PGS003491
(cont-decay-apoA)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Apolipoprotein A apolipoprotein A-IV measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003491/ScoringFiles/PGS003491.txt.gz
PGS003492
(cont-decay-apoB)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Apolipoprotein B apolipoprotein B measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003492/ScoringFiles/PGS003492.txt.gz
PGS003493
(cont-decay-avMSE)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 avMSE visual acuity measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003493/ScoringFiles/PGS003493.txt.gz
PGS003494
(cont-decay-birth_weight)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Birth weight birth weight 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003494/ScoringFiles/PGS003494.txt.gz
PGS003495
(cont-decay-cholesterol)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Cholesterol total cholesterol measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003495/ScoringFiles/PGS003495.txt.gz
PGS003496
(cont-decay-darker_hair0)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Hair color (natural, before greying) strand of hair color 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003496/ScoringFiles/PGS003496.txt.gz
PGS003497
(cont-decay-depressed_for_1w)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Ever depressed for a whole week depressive episode measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003497/ScoringFiles/PGS003497.txt.gz
PGS003498
(cont-decay-diastolic_BP)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Diastolic blood pressure, automated reading diastolic blood pressure 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003498/ScoringFiles/PGS003498.txt.gz
PGS003499
(cont-decay-ECG_PQ_interval)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 PQ interval PR interval 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003499/ScoringFiles/PGS003499.txt.gz
PGS003500
(cont-decay-ECG_QT_interval)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 QT interval QT interval 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003500/ScoringFiles/PGS003500.txt.gz
PGS003501
(cont-decay-ECG_QTC_interval)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 QTc interval QT interval 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003501/ScoringFiles/PGS003501.txt.gz
PGS003502
(cont-decay-erythrocyte)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Red blood cell (erythrocyte) count erythrocyte count 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003502/ScoringFiles/PGS003502.txt.gz
PGS003503
(cont-decay-erythrocyte_width)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Red blood cell (erythrocyte) distribution width Red cell distribution width 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003503/ScoringFiles/PGS003503.txt.gz
PGS003504
(cont-decay-ever_cannabis)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Ever taken cannabis Cannabis use 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003504/ScoringFiles/PGS003504.txt.gz
PGS003505
(cont-decay-F_age_first_birth)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Age at first live birth age at first birth measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003505/ScoringFiles/PGS003505.txt.gz
PGS003506
(cont-decay-F_length_menstrual_cycle)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Length of menstrual cycle menstrual cycle attribute 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003506/ScoringFiles/PGS003506.txt.gz
PGS003507
(cont-decay-F_log_testosterone)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Testosterone (female only) testosterone measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003507/ScoringFiles/PGS003507.txt.gz
PGS003508
(cont-decay-F_menarche)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Age when periods started (menarche) age at menarche 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003508/ScoringFiles/PGS003508.txt.gz
PGS003509
(cont-decay-fat_perc)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Body fat percentage body fat percentage 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003509/ScoringFiles/PGS003509.txt.gz
PGS003510
(cont-decay-fluid_intelligence)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Fluid intelligence score intelligence 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003510/ScoringFiles/PGS003510.txt.gz
PGS003511
(cont-decay-haematocrit_perc)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Haematocrit percentage hematocrit 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003511/ScoringFiles/PGS003511.txt.gz
PGS003512
(cont-decay-haemoglobin)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Haemoglobin concentration hemoglobin measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003512/ScoringFiles/PGS003512.txt.gz
PGS003513
(cont-decay-hand_grip_strength)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Hand grip strength (mean of both) grip strength measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003513/ScoringFiles/PGS003513.txt.gz
PGS003514
(cont-decay-height)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Standing height body height 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003514/ScoringFiles/PGS003514.txt.gz
PGS003515
(cont-decay-immature_reticulocyte_frac)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Immature reticulocyte fraction reticulocyte measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003515/ScoringFiles/PGS003515.txt.gz
PGS003516
(cont-decay-income)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Average total household income before tax household income 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003516/ScoringFiles/PGS003516.txt.gz
PGS003517
(cont-decay-LDL)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 LDL direct low density lipoprotein cholesterol measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003517/ScoringFiles/PGS003517.txt.gz
PGS003518
(cont-decay-less_happy)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 General happiness wellbeing measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003518/ScoringFiles/PGS003518.txt.gz
PGS003519
(cont-decay-less_happy_with_health)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 General happiness with own health health satisfaction measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003519/ScoringFiles/PGS003519.txt.gz
PGS003520
(cont-decay-log_age_first_sex)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Age first had sexual intercourse age at first sexual intercourse measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003520/ScoringFiles/PGS003520.txt.gz
PGS003521
(cont-decay-log_ALP)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Alkaline phosphatase alkaline phosphatase measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003521/ScoringFiles/PGS003521.txt.gz
PGS003522
(cont-decay-log_ALT)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Alanine aminotransferase serum alanine aminotransferase measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003522/ScoringFiles/PGS003522.txt.gz
Showing 3401 to 3450 of 5091 rows