Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002023
(portability-ldpred2_242)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Thyrotoxicosis with or without goiter Thyrotoxicosis 279,385
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002023/ScoringFiles/PGS002023.txt.gz
PGS002024
(portability-ldpred2_244)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hypothyroidism hypothyroidism 632,597
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002024/ScoringFiles/PGS002024.txt.gz
PGS002025
(portability-ldpred2_250.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Type 1 diabetes (T1D) type 1 diabetes mellitus 106,800
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002025/ScoringFiles/PGS002025.txt.gz
PGS002026
(portability-ldpred2_250.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 830,783
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002026/ScoringFiles/PGS002026.txt.gz
PGS002027
(portability-ldpred2_250.7)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diabetic retinopathy diabetic retinopathy 389,029
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002027/ScoringFiles/PGS002027.txt.gz
PGS002028
(portability-ldpred2_251.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hypoglycemia Hypoglycemia 170,554
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002028/ScoringFiles/PGS002028.txt.gz
PGS002029
(portability-ldpred2_272)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Disorders of lipoid metabolism Abnormal circulating lipid concentration 764,390
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002029/ScoringFiles/PGS002029.txt.gz
PGS002030
(portability-ldpred2_274.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Gout gout 163,210
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002030/ScoringFiles/PGS002030.txt.gz
PGS002031
(portability-ldpred2_275.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Disorders of iron metabolism iron metabolism disease 6,713
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002031/ScoringFiles/PGS002031.txt.gz
PGS002032
(portability-ldpred2_277.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Disorders of bilirubin excretion bilirubin metabolism disease 19,768
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002032/ScoringFiles/PGS002032.txt.gz
PGS002033
(portability-ldpred2_278)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Overweight, obesity and other hyperalimentation obesity,
overweight body mass index status,
overnutrition		 846,292
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002033/ScoringFiles/PGS002033.txt.gz
PGS002034
(portability-ldpred2_286.12)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Congenital deficiency of other clotting factors (including factor VII) congenital vitamin K-dependent coagulation factors deficiency 32,552
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002034/ScoringFiles/PGS002034.txt.gz
PGS002035
(portability-ldpred2_290.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Dementia dementia 39,752
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002035/ScoringFiles/PGS002035.txt.gz
PGS002036
(portability-ldpred2_296.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Depression depressive disorder 807,338
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002036/ScoringFiles/PGS002036.txt.gz
PGS002037
(portability-ldpred2_318)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Tobacco use disorder nicotine dependence 847,691
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002037/ScoringFiles/PGS002037.txt.gz
PGS002038
(portability-ldpred2_335)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Multiple sclerosis multiple sclerosis 129,077
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002038/ScoringFiles/PGS002038.txt.gz
PGS002039
(portability-ldpred2_351)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Other peripheral nerve disorders peripheral nervous system disease 799,326
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002039/ScoringFiles/PGS002039.txt.gz
PGS002040
(portability-ldpred2_361)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Retinal detachments and defects retinal detachment 706,872
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002040/ScoringFiles/PGS002040.txt.gz
PGS002041
(portability-ldpred2_362.29)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Macular degeneration (senile) of retina NOS age-related macular degeneration 116,538
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002041/ScoringFiles/PGS002041.txt.gz
PGS002042
(portability-ldpred2_364.5)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Corneal dystrophy corneal dystrophy 59,944
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002042/ScoringFiles/PGS002042.txt.gz
PGS002043
(portability-ldpred2_365)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Glaucoma glaucoma 672,952
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002043/ScoringFiles/PGS002043.txt.gz
PGS002044
(portability-ldpred2_366)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cataract cataract 711,169
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002044/ScoringFiles/PGS002044.txt.gz
PGS002045
(portability-ldpred2_371)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Inflammation of the eye eye disease,
eye inflammation		 527,030
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002045/ScoringFiles/PGS002045.txt.gz
PGS002046
(portability-ldpred2_383)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Otosclerosis otosclerosis 570,308
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002046/ScoringFiles/PGS002046.txt.gz
PGS002047
(portability-ldpred2_401)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hypertension hypertension 918,325
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002047/ScoringFiles/PGS002047.txt.gz
PGS002048
(portability-ldpred2_411.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Coronary atherosclerosis coronary atherosclerosis 762,124
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002048/ScoringFiles/PGS002048.txt.gz
PGS002049
(portability-ldpred2_415)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Pulmonary heart disease cor pulmonale 222,371
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002049/ScoringFiles/PGS002049.txt.gz
PGS002050
(portability-ldpred2_427.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Atrial fibrillation and flutter atrial fibrillation,
atrial flutter		 554,908
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002050/ScoringFiles/PGS002050.txt.gz
PGS002051
(portability-ldpred2_428)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Congestive heart failure; nonhypertensive congestive heart failure 642,241
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002051/ScoringFiles/PGS002051.txt.gz
PGS002052
(portability-ldpred2_433.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Occlusion and stenosis of precerebral arteries occlusion precerebral artery 490,459
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002052/ScoringFiles/PGS002052.txt.gz
PGS002053
(portability-ldpred2_433)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cerebrovascular disease cerebrovascular disorder 599,726
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002053/ScoringFiles/PGS002053.txt.gz
PGS002054
(portability-ldpred2_442.11)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Abdominal aortic aneurysm Abdominal Aortic Aneurysm 592,187
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002054/ScoringFiles/PGS002054.txt.gz
PGS002055
(portability-ldpred2_443.9)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Peripheral vascular disease, unspecified peripheral vascular disease 599,514
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002055/ScoringFiles/PGS002055.txt.gz
PGS002056
(portability-ldpred2_451)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Phlebitis and thrombophlebitis Phlebitis,
Thrombophlebitis		 114,679
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002056/ScoringFiles/PGS002056.txt.gz
PGS002057
(portability-ldpred2_454)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Varicose veins Varicose veins 760,630
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002057/ScoringFiles/PGS002057.txt.gz
PGS002058
(portability-ldpred2_455)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hemorrhoids hemorrhoid 780,418
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002058/ScoringFiles/PGS002058.txt.gz
PGS002059
(portability-ldpred2_459.9)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Circulatory disease NEC vascular disease 604,572
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002059/ScoringFiles/PGS002059.txt.gz
PGS002060
(portability-ldpred2_471)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Nasal polyps Nasal polyposis 553,242
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002060/ScoringFiles/PGS002060.txt.gz
PGS002061
(portability-ldpred2_495)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Asthma asthma 793,375
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002061/ScoringFiles/PGS002061.txt.gz
PGS002062
(portability-ldpred2_496)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Chronic airway obstruction chronic obstructive pulmonary disease 811,003
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002062/ScoringFiles/PGS002062.txt.gz
PGS002063
(portability-ldpred2_530.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Esophagitis, GERD and related diseases gastroesophageal reflux disease,
esophagitis		 836,413
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002063/ScoringFiles/PGS002063.txt.gz
PGS002064
(portability-ldpred2_540)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Appendiceal conditions disorder of appendix 497,422
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002064/ScoringFiles/PGS002064.txt.gz
PGS002065
(portability-ldpred2_550.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Inguinal hernia Inguinal hernia 691,268
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002065/ScoringFiles/PGS002065.txt.gz
PGS002066
(portability-ldpred2_555.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ulcerative colitis ulcerative colitis 566,637
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002066/ScoringFiles/PGS002066.txt.gz
PGS002067
(portability-ldpred2_557.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Celiac disease celiac disease 58,231
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002067/ScoringFiles/PGS002067.txt.gz
PGS002068
(portability-ldpred2_562.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diverticulosis Colonic diverticula 831,212
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002068/ScoringFiles/PGS002068.txt.gz
PGS002069
(portability-ldpred2_564)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Functional digestive disorders digestive system disease 747,820
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002069/ScoringFiles/PGS002069.txt.gz
PGS002070
(portability-ldpred2_565.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Anal and rectal polyp polyp of rectum,
anal polyp		 584,133
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002070/ScoringFiles/PGS002070.txt.gz
PGS002071
(portability-ldpred2_571.5)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Other chronic nonalcoholic liver disease liver disease 352,506
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002071/ScoringFiles/PGS002071.txt.gz
PGS002072
(portability-ldpred2_574)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cholelithiasis and cholecystitis cholelithiasis,
Cholecystitis		 428,587
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002072/ScoringFiles/PGS002072.txt.gz
Showing 1951 to 2000 of 5091 rows