Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002073
(portability-ldpred2_575)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Other biliary tract disease biliary tract disease 363,801
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002073/ScoringFiles/PGS002073.txt.gz
PGS002074
(portability-ldpred2_593)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hematuria Hematuria 664,167
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002074/ScoringFiles/PGS002074.txt.gz
PGS002075
(portability-ldpred2_594)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Urinary calculus urolithiasis 731,196
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002075/ScoringFiles/PGS002075.txt.gz
PGS002076
(portability-ldpred2_600)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hyperplasia of prostate benign prostatic hyperplasia 627,341
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002076/ScoringFiles/PGS002076.txt.gz
PGS002077
(portability-ldpred2_615)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Endometriosis endometriosis 534,802
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002077/ScoringFiles/PGS002077.txt.gz
PGS002078
(portability-ldpred2_618)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Genital prolapse prolapse of female genital organ 774,553
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002078/ScoringFiles/PGS002078.txt.gz
PGS002079
(portability-ldpred2_626.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Irregular menstrual cycle/bleeding menstrual cycle attribute 719,789
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002079/ScoringFiles/PGS002079.txt.gz
PGS002080
(portability-ldpred2_654.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Rhesus isoimmunization in pregnancy Rh isoimmunization 32,414
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002080/ScoringFiles/PGS002080.txt.gz
PGS002081
(portability-ldpred2_681)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Superficial cellulitis and abscess cellulitis 640,921
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002081/ScoringFiles/PGS002081.txt.gz
PGS002082
(portability-ldpred2_695.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lupus (localized and systemic) lupus erythematosus 361,553
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002082/ScoringFiles/PGS002082.txt.gz
PGS002083
(portability-ldpred2_696.4)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Psoriasis psoriasis 71,744
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002083/ScoringFiles/PGS002083.txt.gz
PGS002084
(portability-ldpred2_697)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sarcoidosis skin sarcoidosis 403,417
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002084/ScoringFiles/PGS002084.txt.gz
PGS002085
(portability-ldpred2_702.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Seborrheic keratosis seborrheic keratosis 481,233
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002085/ScoringFiles/PGS002085.txt.gz
PGS002086
(portability-ldpred2_704)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diseases of hair and hair follicles disorder of pilosebaceous unit 160,693
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002086/ScoringFiles/PGS002086.txt.gz
PGS002087
(portability-ldpred2_706.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sebaceous cyst Epidermal Inclusion Cyst 206,669
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002087/ScoringFiles/PGS002087.txt.gz
PGS002088
(portability-ldpred2_714.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Rheumatoid arthritis rheumatoid arthritis 95,083
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002088/ScoringFiles/PGS002088.txt.gz
PGS002089
(portability-ldpred2_715.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankylosing spondylitis ankylosing spondylitis 22,026
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002089/ScoringFiles/PGS002089.txt.gz
PGS002090
(portability-ldpred2_716)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Other arthropathies Arthropathy 859,336
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002090/ScoringFiles/PGS002090.txt.gz
PGS002091
(portability-ldpred2_717)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Polymyalgia rheumatica polymyalgia rheumatica 129,938
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002091/ScoringFiles/PGS002091.txt.gz
PGS002092
(portability-ldpred2_728.71)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Contracture of palmar fascia [Dupuytren's disease] Dupuytren Contracture 484,484
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002092/ScoringFiles/PGS002092.txt.gz
PGS002093
(portability-ldpred2_735.3)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hallux valgus (Bunion) Hallux valgus 773,461
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002093/ScoringFiles/PGS002093.txt.gz
PGS002094
(portability-ldpred2_740)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Osteoarthrosis osteoarthritis 827,887
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002094/ScoringFiles/PGS002094.txt.gz
PGS002095
(portability-ldpred2_743.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Osteoporosis osteoporosis 658,775
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002095/ScoringFiles/PGS002095.txt.gz
PGS002096
(portability-ldpred2_785)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Abdominal pain Abdominal pain 791,954
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002096/ScoringFiles/PGS002096.txt.gz
PGS002097
(portability-ldpred2_960.2)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Allergy/adverse effect of penicillin drug allergy 742,904
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002097/ScoringFiles/PGS002097.txt.gz
PGS002098
(portability-ldpred2_abnormal_appetite)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Recent poor appetite or overeating eating disorder 764,146
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002098/ScoringFiles/PGS002098.txt.gz
PGS002099
(portability-ldpred2_albumin)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Albumin serum albumin amount 816,264
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002099/ScoringFiles/PGS002099.txt.gz
PGS002100
(portability-ldpred2_ankle_spacing)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ankle spacing width anthropometric measurement 917,925
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002100/ScoringFiles/PGS002100.txt.gz
PGS002101
(portability-ldpred2_apoA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Apolipoprotein A apolipoprotein A 1 measurement 681,234
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002101/ScoringFiles/PGS002101.txt.gz
PGS002102
(portability-ldpred2_apoB)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Apolipoprotein B apolipoprotein B measurement 315,483
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002102/ScoringFiles/PGS002102.txt.gz
PGS002103
(portability-ldpred2_avMSE)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 avMSE visual acuity measurement 833,170
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002103/ScoringFiles/PGS002103.txt.gz
PGS002104
(portability-ldpred2_bad_hearing)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hearing difficulty/problems hearing disorder 869,179
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002104/ScoringFiles/PGS002104.txt.gz
PGS002105
(portability-ldpred2_birth_weight)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Birth weight birth weight 827,714
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002105/ScoringFiles/PGS002105.txt.gz
PGS002106
(portability-ldpred2_calcium)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Calcium calcium measurement 702,009
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002106/ScoringFiles/PGS002106.txt.gz
PGS002107
(portability-ldpred2_celiac_gluten)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diagnosed with coeliac disease or gluten sensitivity celiac disease 39,066
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002107/ScoringFiles/PGS002107.txt.gz
PGS002108
(portability-ldpred2_cholesterol)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cholesterol total cholesterol measurement 451,160
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002108/ScoringFiles/PGS002108.txt.gz
PGS002109
(portability-ldpred2_darker_hair0)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hair color (natural, before greying) strand of hair color 393,500
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002109/ScoringFiles/PGS002109.txt.gz
PGS002110
(portability-ldpred2_darker_skin0)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Skin color Abnormality of skin pigmentation 275,831
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002110/ScoringFiles/PGS002110.txt.gz
PGS002111
(portability-ldpred2_depressed_for_1w)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ever depressed for a whole week depressive symptom measurement 791,873
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002111/ScoringFiles/PGS002111.txt.gz
PGS002112
(portability-ldpred2_depression_feelings)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Recent feelings of depression depressive symptom measurement 748,601
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002112/ScoringFiles/PGS002112.txt.gz
PGS002113
(portability-ldpred2_depression_stress_trauma)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Depression possibly related to stressful or traumatic event depressive episode measurement,
trauma exposure measurement		 545,334
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002113/ScoringFiles/PGS002113.txt.gz
PGS002114
(portability-ldpred2_diastolic_BP)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Diastolic blood pressure, automated reading diastolic blood pressure 933,950
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002114/ScoringFiles/PGS002114.txt.gz
PGS002115
(portability-ldpred2_drink_alcohol)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alcohol drinker status alcohol drinking 766,714
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002115/ScoringFiles/PGS002115.txt.gz
PGS002116
(portability-ldpred2_ECG_P_duration)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 P duration P wave duration 564,874
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002116/ScoringFiles/PGS002116.txt.gz
PGS002117
(portability-ldpred2_ECG_PP_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 PP interval PP interval 667,705
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002117/ScoringFiles/PGS002117.txt.gz
PGS002118
(portability-ldpred2_ECG_PQ_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 PQ interval PR interval 413,539
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002118/ScoringFiles/PGS002118.txt.gz
PGS002119
(portability-ldpred2_ECG_QT_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 QT interval QT interval 571,268
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002119/ScoringFiles/PGS002119.txt.gz
PGS002120
(portability-ldpred2_ECG_QTC_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 QTc interval QT interval 490,392
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002120/ScoringFiles/PGS002120.txt.gz
PGS002121
(portability-ldpred2_ECG_RR_interval)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 RR interval RR interval 616,710
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002121/ScoringFiles/PGS002121.txt.gz
PGS002122
(portability-ldpred2_erythrocyte_width)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Red blood cell (erythrocyte) distribution width Red cell distribution width 543,714
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002122/ScoringFiles/PGS002122.txt.gz
Showing 2001 to 2050 of 5091 rows