Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002173
(portability-ldpred2_log_heel_BMD)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Heel bone mineral density (BMD) heel bone mineral density 729,074
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002173/ScoringFiles/PGS002173.txt.gz
PGS002174
(portability-ldpred2_log_heel_BUA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Heel Broadband ultrasound attenuation, direct entry heel bone mineral density 732,595
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002174/ScoringFiles/PGS002174.txt.gz
PGS002175
(portability-ldpred2_log_heel_SoS)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Speed of sound through heel velocity of sound measurement 724,667
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002175/ScoringFiles/PGS002175.txt.gz
PGS002176
(portability-ldpred2_log_hip_circ)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hip circumference hip circumference 977,411
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002176/ScoringFiles/PGS002176.txt.gz
PGS002177
(portability-ldpred2_log_HLR_reticulocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 High light scatter reticulocyte count reticulocyte measurement 780,048
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002177/ScoringFiles/PGS002177.txt.gz
PGS002178
(portability-ldpred2_log_IGF1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 IGF-1 IGF-1 measurement 817,740
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002178/ScoringFiles/PGS002178.txt.gz
PGS002179
(portability-ldpred2_log_impedance)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Impedance of whole body body composition measurement 978,109
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002179/ScoringFiles/PGS002179.txt.gz
PGS002180
(portability-ldpred2_log_leukocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 White blood cell (leukocyte) count leukocyte quantity 846,337
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002180/ScoringFiles/PGS002180.txt.gz
PGS002181
(portability-ldpred2_log_lipoA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lipoprotein A lipoprotein A measurement 31,355
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002181/ScoringFiles/PGS002181.txt.gz
PGS002182
(portability-ldpred2_log_log_gammaGT)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Gamma-glutamyl transferase serum gamma-glutamyl transferase measurement 713,481
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002182/ScoringFiles/PGS002182.txt.gz
PGS002183
(portability-ldpred2_log_lymphocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lymphocyte count lymphocyte count 814,921
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002183/ScoringFiles/PGS002183.txt.gz
PGS002184
(portability-ldpred2_log_mean_carotid_IMT)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean carotid IMT (intima-medial thickness) at 120/150/210/240 degrees carotid artery thickness 734,561
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002184/ScoringFiles/PGS002184.txt.gz
PGS002185
(portability-ldpred2_log_microalbumin_urine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Microalbumin in urine urinary microalbumin measurement 671,610
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002185/ScoringFiles/PGS002185.txt.gz
PGS002186
(portability-ldpred2_log_monocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Monocyte count monocyte count 641,455
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002186/ScoringFiles/PGS002186.txt.gz
PGS002187
(portability-ldpred2_log_neutrophil)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Neutrophil count neutrophil count 803,767
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002187/ScoringFiles/PGS002187.txt.gz
PGS002188
(portability-ldpred2_log_platelet_crit)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Platelet crit platelet crit 703,576
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002188/ScoringFiles/PGS002188.txt.gz
PGS002189
(portability-ldpred2_log_platelet_volume)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean platelet (thrombocyte) volume platelet volume 462,934
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002189/ScoringFiles/PGS002189.txt.gz
PGS002190
(portability-ldpred2_log_platelet_width)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Platelet distribution width platelet component distribution width 482,649
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002190/ScoringFiles/PGS002190.txt.gz
PGS002191
(portability-ldpred2_log_platelet)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Platelet count platelet count 663,591
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002191/ScoringFiles/PGS002191.txt.gz
PGS002192
(portability-ldpred2_log_potassium_urine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Potassium in urine urine potassium amount 881,567
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002192/ScoringFiles/PGS002192.txt.gz
PGS002193
(portability-ldpred2_log_pulse_rate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Pulse rate, automated reading heart rate 858,487
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002193/ScoringFiles/PGS002193.txt.gz
PGS002194
(portability-ldpred2_log_reticulocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reticulocyte count reticulocyte count 773,305
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002194/ScoringFiles/PGS002194.txt.gz
PGS002195
(portability-ldpred2_log_SHBG)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sex hormone binding globulin (SHBG) sex hormone-binding globulin measurement 650,364
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002195/ScoringFiles/PGS002195.txt.gz
PGS002196
(portability-ldpred2_log_sleep)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sleep duration sleep duration trait 927,619
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002196/ScoringFiles/PGS002196.txt.gz
PGS002197
(portability-ldpred2_log_triglycerides)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Triglycerides triglyceride measurement 731,035
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002197/ScoringFiles/PGS002197.txt.gz
PGS002198
(portability-ldpred2_log_urea)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Urea urea measurement 820,118
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002198/ScoringFiles/PGS002198.txt.gz
PGS002199
(portability-ldpred2_log_ventricular_rate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ventricular rate ventricular rate measurement 705,680
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002199/ScoringFiles/PGS002199.txt.gz
PGS002200
(portability-ldpred2_log_vitaminD)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Vitamin D vitamin D measurement 567,735
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002200/ScoringFiles/PGS002200.txt.gz
PGS002201
(portability-ldpred2_log_waist_circ)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Waist circumference waist circumference 984,035
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002201/ScoringFiles/PGS002201.txt.gz
PGS002202
(portability-ldpred2_log_water_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body water mass whole body water mass 966,737
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002202/ScoringFiles/PGS002202.txt.gz
PGS002203
(portability-ldpred2_lymphocyte_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lymphocyte percentage lymphocyte percentage of leukocytes 775,312
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002203/ScoringFiles/PGS002203.txt.gz
PGS002204
(portability-ldpred2_M_less_hair)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hair/balding pattern balding measurement 593,179
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002204/ScoringFiles/PGS002204.txt.gz
PGS002205
(portability-ldpred2_M_log_testosterone)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Testosterone (male only) testosterone measurement,
male		 584,991
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002205/ScoringFiles/PGS002205.txt.gz
PGS002206
(portability-ldpred2_MCH)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean corpuscular hemoglobin mean corpuscular hemoglobin 504,929
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002206/ScoringFiles/PGS002206.txt.gz
PGS002207
(portability-ldpred2_MCV)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean corpuscular volume erythrocyte volume 564,228
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002207/ScoringFiles/PGS002207.txt.gz
PGS002208
(portability-ldpred2_monocyte_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Monocyte percentage monocyte percentage of leukocytes 544,905
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002208/ScoringFiles/PGS002208.txt.gz
PGS002209
(portability-ldpred2_more_evening)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Morning/evening person (chronotype) chronotype measurement 955,439
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002209/ScoringFiles/PGS002209.txt.gz
PGS002210
(portability-ldpred2_more_sunscreen)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Use of sun/uv protection sun exposure measurement 821,654
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002210/ScoringFiles/PGS002210.txt.gz
PGS002211
(portability-ldpred2_myopia)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Myopia diagnosis Myopia 825,631
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002211/ScoringFiles/PGS002211.txt.gz
PGS002212
(portability-ldpred2_narcolepsy)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Daytime dozing / sleeping (narcolepsy) narcolepsy 893,802
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002212/ScoringFiles/PGS002212.txt.gz
PGS002213
(portability-ldpred2_neuroticism)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Neuroticism score neuroticism measurement 950,183
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002213/ScoringFiles/PGS002213.txt.gz
PGS002214
(portability-ldpred2_neutrophil_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Neutrophil percentage neutrophil percentage of leukocytes 769,542
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002214/ScoringFiles/PGS002214.txt.gz
PGS002215
(portability-ldpred2_no_sex)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Age first had sexual intercourse age at first sexual intercourse measurement 633,660
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002215/ScoringFiles/PGS002215.txt.gz
PGS002216
(portability-ldpred2_phosphate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Phosphate phosphate measurement 708,693
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002216/ScoringFiles/PGS002216.txt.gz
PGS002217
(portability-ldpred2_play_computer)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Plays computer games lifestyle measurement 938,047
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002217/ScoringFiles/PGS002217.txt.gz
PGS002218
(portability-ldpred2_poorer_health)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Overall health rating health trait 958,362
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002218/ScoringFiles/PGS002218.txt.gz
PGS002219
(portability-ldpred2_protein)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Total protein total blood protein measurement 819,013
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002219/ScoringFiles/PGS002219.txt.gz
PGS002220
(portability-ldpred2_red_hair)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hair color (natural, before greying) strand of hair color 21,400
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002220/ScoringFiles/PGS002220.txt.gz
PGS002221
(portability-ldpred2_reticulocyte_volume)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean reticulocyte volume mean reticulocyte volume 523,074
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002221/ScoringFiles/PGS002221.txt.gz
PGS002222
(portability-ldpred2_self_harm_thoughts)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ever contemplated self-harm / Recent thoughts of suicide or self-harm Self-injurious behavior 761,279
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002222/ScoringFiles/PGS002222.txt.gz
Showing 2101 to 2150 of 5091 rows