Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002123
(portability-ldpred2_erythrocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Red blood cell (erythrocyte) count erythrocyte count 788,123
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002123/ScoringFiles/PGS002123.txt.gz
PGS002124
(portability-ldpred2_ever_addicted)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ever addicted to any substance or behaviour addictive behaviour 566,292
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002124/ScoringFiles/PGS002124.txt.gz
PGS002125
(portability-ldpred2_ever_cannabis)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ever taken cannabis Cannabis use 816,604
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002125/ScoringFiles/PGS002125.txt.gz
PGS002126
(portability-ldpred2_ever_smoked)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ever smoked smoking status measurement 931,635
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002126/ScoringFiles/PGS002126.txt.gz
PGS002127
(portability-ldpred2_F_age_first_birth)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Age at first live birth age at first birth measurement 848,784
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002127/ScoringFiles/PGS002127.txt.gz
PGS002128
(portability-ldpred2_F_irregular_menstrual_cycle)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Length of menstrual cycle menstrual cycle attribute 414,081
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002128/ScoringFiles/PGS002128.txt.gz
PGS002129
(portability-ldpred2_F_length_menstrual_cycle)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Length of menstrual cycle menstrual cycle attribute 491,888
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002129/ScoringFiles/PGS002129.txt.gz
PGS002130
(portability-ldpred2_F_log_testosterone)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Testosterone (female only) testosterone measurement,
female		 650,195
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002130/ScoringFiles/PGS002130.txt.gz
PGS002131
(portability-ldpred2_F_menarche)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Age when periods started (menarche) age at menarche 854,735
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002131/ScoringFiles/PGS002131.txt.gz
PGS002132
(portability-ldpred2_fall_1y)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Falls in the last year fall 826,502
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002132/ScoringFiles/PGS002132.txt.gz
PGS002133
(portability-ldpred2_fat_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Body fat percentage body fat percentage 995,419
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002133/ScoringFiles/PGS002133.txt.gz
PGS002134
(portability-ldpred2_FEV1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Forced expiratory volume in 1-second (FEV1), Best measure forced expiratory volume 940,003
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002134/ScoringFiles/PGS002134.txt.gz
PGS002135
(portability-ldpred2_fluid_intelligence)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Fluid intelligence score intelligence 903,259
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002135/ScoringFiles/PGS002135.txt.gz
PGS002136
(portability-ldpred2_foreboding_feelings)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Recent feelings of foreboding worry measurement 733,839
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002136/ScoringFiles/PGS002136.txt.gz
PGS002137
(portability-ldpred2_fracture_5y)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Fractured/broken bones in last 5 years bone fracture 738,021
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002137/ScoringFiles/PGS002137.txt.gz
PGS002138
(portability-ldpred2_FVC)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Forced vital capacity (FVC), Best measure vital capacity 940,300
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002138/ScoringFiles/PGS002138.txt.gz
PGS002139
(portability-ldpred2_geek_time)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Time spent watching television (TV) or using computer lifestyle measurement 956,532
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002139/ScoringFiles/PGS002139.txt.gz
PGS002140
(portability-ldpred2_glasses)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Wears glasses or contact lenses eye measurement 762,684
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002140/ScoringFiles/PGS002140.txt.gz
PGS002141
(portability-ldpred2_haematocrit_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Haematocrit percentage hematocrit 797,804
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002141/ScoringFiles/PGS002141.txt.gz
PGS002142
(portability-ldpred2_haemoglobin)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Haemoglobin concentration hemoglobin measurement 786,386
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002142/ScoringFiles/PGS002142.txt.gz
PGS002143
(portability-ldpred2_hand_grip_strength)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hand grip strength (mean of both) grip strength measurement 966,283
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002143/ScoringFiles/PGS002143.txt.gz
PGS002144
(portability-ldpred2_hard_falling_asleep)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Trouble falling asleep Sleep Disorder 539,784
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002144/ScoringFiles/PGS002144.txt.gz
PGS002145
(portability-ldpred2_headaches_for_3m)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Headaches for 3+ months headache disorder 720,580
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002145/ScoringFiles/PGS002145.txt.gz
PGS002146
(portability-ldpred2_height)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Standing height body height 922,538
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002146/ScoringFiles/PGS002146.txt.gz
PGS002147
(portability-ldpred2_immature_reticulocyte_frac)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Immature reticulocyte fraction reticulocyte amount 664,696
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002147/ScoringFiles/PGS002147.txt.gz
PGS002148
(portability-ldpred2_income)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Average total household income before tax household income 932,197
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002148/ScoringFiles/PGS002148.txt.gz
PGS002149
(portability-ldpred2_insomnia)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sleeplessness / insomnia insomnia 926,585
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002149/ScoringFiles/PGS002149.txt.gz
PGS002150
(portability-ldpred2_LDL)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 LDL direct low density lipoprotein cholesterol measurement 360,007
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002150/ScoringFiles/PGS002150.txt.gz
PGS002151
(portability-ldpred2_left_handed)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Handedness (chirality/laterality) handedness 734,236
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002151/ScoringFiles/PGS002151.txt.gz
PGS002152
(portability-ldpred2_less_alcohol)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alcohol intake frequency alcohol consumption quality 946,965
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002152/ScoringFiles/PGS002152.txt.gz
PGS002153
(portability-ldpred2_less_happy_with_health)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 General happiness with own health health satisfaction measurement 824,602
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002153/ScoringFiles/PGS002153.txt.gz
PGS002154
(portability-ldpred2_less_happy)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 General happiness wellbeing measurement 806,011
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002154/ScoringFiles/PGS002154.txt.gz
PGS002155
(portability-ldpred2_less_tanned)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ease of skin tanning suntan 240,701
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002155/ScoringFiles/PGS002155.txt.gz
PGS002156
(portability-ldpred2_log_age_first_sex)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Age first had sexual intercourse age at first sexual intercourse measurement 972,919
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002156/ScoringFiles/PGS002156.txt.gz
PGS002157
(portability-ldpred2_log_ALP)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alkaline phosphatase alkaline phosphatase measurement 874,365
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002157/ScoringFiles/PGS002157.txt.gz
PGS002158
(portability-ldpred2_log_ALT)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alanine aminotransferase serum alanine aminotransferase measurement 774,274
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002158/ScoringFiles/PGS002158.txt.gz
PGS002159
(portability-ldpred2_log_AST)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Aspartate aminotransferase level aspartate aminotransferase measurement 716,914
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002159/ScoringFiles/PGS002159.txt.gz
PGS002160
(portability-ldpred2_log_bilirubin)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Total bilirubin bilirubin measurement 120,068
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002160/ScoringFiles/PGS002160.txt.gz
PGS002161
(portability-ldpred2_log_BMI)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Body mass index (BMI) body mass index 990,022
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002161/ScoringFiles/PGS002161.txt.gz
PGS002162
(portability-ldpred2_log_creatinine_urine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Creatinine (enzymatic) in urine creatinine clearance measurement 922,786
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002162/ScoringFiles/PGS002162.txt.gz
PGS002163
(portability-ldpred2_log_creatinine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Creatinine serum creatinine amount 835,964
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002163/ScoringFiles/PGS002163.txt.gz
PGS002164
(portability-ldpred2_log_CRP)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 C-reactive protein C-reactive protein measurement 736,345
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002164/ScoringFiles/PGS002164.txt.gz
PGS002165
(portability-ldpred2_log_cystatinC)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 781,302
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002165/ScoringFiles/PGS002165.txt.gz
PGS002166
(portability-ldpred2_log_ECG_QRS_duration)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 QRS duration QRS duration 471,172
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002166/ScoringFiles/PGS002166.txt.gz
PGS002167
(portability-ldpred2_log_eosinophil_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Eosinophil percentage eosinophil percentage of leukocytes 593,459
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002167/ScoringFiles/PGS002167.txt.gz
PGS002168
(portability-ldpred2_log_fat_free_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body fat-free mass lean body mass 966,825
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002168/ScoringFiles/PGS002168.txt.gz
PGS002169
(portability-ldpred2_log_fat_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body fat mass fat pad mass 988,292
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002169/ScoringFiles/PGS002169.txt.gz
PGS002170
(portability-ldpred2_log_glucose)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Glucose glucose measurement 602,241
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002170/ScoringFiles/PGS002170.txt.gz
PGS002171
(portability-ldpred2_log_HbA1c)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Glycated haemoglobin (HbA1c) HbA1c measurement 736,730
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002171/ScoringFiles/PGS002171.txt.gz
PGS002172
(portability-ldpred2_log_HDL)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 HDL cholesterol high density lipoprotein cholesterol measurement 732,902
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002172/ScoringFiles/PGS002172.txt.gz
Showing 2051 to 2100 of 5091 rows